Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015886278.1_cds_XP_016440394.1_35858
CDS Infomation

[gene=LOC107766162] [db_xref=GeneID:107766162] [protein=ribosomal RNA small subunit methyltransferase B isoform X4] [protein_id=XP_016440394.1] [location=join(240..414,774..836,992..1146,1305..1418,2331..2396,3170..3253,3331..3417,3877..3968,4057..4117,4475..4534,5137..5197,5857..5964,6800..6918,6996..7067,7214..7288)] [gbkey=CDS]
Sequence

ATGATGCAAACATCCAATTCTCCGGCGTCTTCCTTCAGACATACAATTATGCCTTCACTG
CCCCAATTGCTTTCGGGTCGGATACTCCATTTTGCAAAGCTCTCTGCAACTTCTTCTTAT
GAATCCCATTCCACTAAACAAGTCAAATTTCCAAAGAAAATCAGCAGAAAAACAGATTCA
GGCAGTCCTCCAAGGAATACACAGAATCTGAATTTAGAAGTTTCTCCTCATAGAGCTGTG
TCTGCGGTAAGATTAATGCGCATAGAGCTGGGTGGTGCATTTGCTGATCTTCTGAATGAG
CAAGGAAAGGGTTCAGGGGAGAATGAAATGGGATATGTTGAAAGAACTCTTGGATTTCGC
ACTCGTCACTTAGAAGACAGAGATTTAAGACTGGTCACGGAGGTTGTTGGAGGTACCATT
CGCTGGAGAAGATATCTTGATCACTTGATTCTTTCGTTATGCCACGATGAGAGTACATTC
AGAAGCATGGAACCTCTTCTATTACAGATTCTTCGAATTGGTTTCTATGAGATCACCAAG
TTAGATATGCCATCATATGCTGTTGTAGACGAGAATGTAAGGCTCGCTAAGGTTGCTCTT
AGACCAGGTGCCGGTAACTTGGTTAATGGGATTCTCAGGAAACTAATTGTCCTTAAGGAA
AGTGATTCCCTTCCAGCAGTAAAAGTGGACGGTGATGATCGTCAGCAAGCACGTGGTCTT
GCCACTCTTTACTCTCATCCAGTTTGGATGGTAAGAAGATGGACAAAGTATTTTGGATGG
GACGAAGCTATTAAGCTTATGACATGGAATAACAGCTCTCCCAGTTTCAGTCTACGGGCA
AATACTGGGAAAGGTTTGACAGGGGCTGATCTGGTCTCAAGGCTTAAAATGTTGAAGGTT
CCACATGAGCCTTCTCTATACTTGGATGATTTTGTTCGTATTAAAACTGGAATGCAGAAT
GTTATACAGGCTGGGTTACTAAAAGAAGGCTTCTGTGCAGTCCAGGATGAAAGTGCAGGA
TTAGTAGTCTCTATTGTTGATCCTCAACCTGGTGAGAACATTATTGATTGTTGTGCTGCT
CCAGGAGGGAAAACCTTGTTCATGGCTTCCTGCTTGAATGGCCAAGGTACATTATTTGCC
GTTGACATAAATGAAGGTCGGTTGCGGATACTCAAAGAGACAGCCAAATTGCACCAAGTT
ATTGATGTCATCAGTACTATCCATGCTGATCTTCGAACTTTTTCTACCGATAAGGTTGTA
GAATGGGATAAAGTCTTGCTGGATGCACCTTGTTCAGGGCTGGGTGTTCTTTCTAAGGTA
GTAGTAGCTGGGACATTTGAAATGTATATTTCCTCTTTGTTTGCGAAAGCGAGCAGATTT
GCGTTGGAATAG

Peptide Sequence

PEP ID

XP_016440394.1
PEP Infomation

PREDICTED: ribosomal RNA small subunit methyltransferase B isoform X4 [Nicotiana tabacum]
Sequence

MMQTSNSPASSFRHTIMPSLPQLLSGRILHFAKLSATSSYESHSTKQVKFPKKISRKTDS
GSPPRNTQNLNLEVSPHRAVSAVRLMRIELGGAFADLLNEQGKGSGENEMGYVERTLGFR
TRHLEDRDLRLVTEVVGGTIRWRRYLDHLILSLCHDESTFRSMEPLLLQILRIGFYEITK
LDMPSYAVVDENVRLAKVALRPGAGNLVNGILRKLIVLKESDSLPAVKVDGDDRQQARGL
ATLYSHPVWMVRRWTKYFGWDEAIKLMTWNNSSPSFSLRANTGKGLTGADLVSRLKMLKV
PHEPSLYLDDFVRIKTGMQNVIQAGLLKEGFCAVQDESAGLVVSIVDPQPGENIIDCCAA
PGGKTLFMASCLNGQGTLFAVDINEGRLRILKETAKLHQVIDVISTIHADLRTFSTDKVV
EWDKVLLDAPCSGLGVLSKVVVAGTFEMYISSLFAKASRFALE

Transcript Sequence

Gene sequence data has not been registered.